Whole-genome sequencing of Clostridioides difficile from rectal swabs... - SRA

SRX20165375: Whole-genome sequencing of Clostridioides difficile from rectal swabs and stool samples in an ICU setting
1 ILLUMINA (Illumina MiSeq) run: 951,483 spots, 548.8M bases, 317.9Mb downloads

Design: Illumina library prep using Nextera DNA CD indices

Submitted by: Brigham and Women's Hospital

Study: Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA

PRJNA278886 • SRP056445 • All experiments • All runs

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The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support national surveillance of clinically identified pathogens and provide invaluable information to infection control in hospital.

Sample:

SAMN34492983 • SRS17489481 • All experiments • All runs

Organism: Clostridioides difficile

Library:

Name: 0000-0095-0138

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 951,483 spots, 548.8M bases, 317.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR24377034	951,483	548.8M	317.9Mb	2023-05-01

ID:: 27582537

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